Thank you for your response. Is there documentation for the commands? I spent a lot of time trying to figure this out. I have a potato computer at home, so I'll have to test this later.
That's what I found as well Shaun. I have seen it at least in versions 3.5.21.1 and 3.5.21.3. There seems to be an issue with the FBD/LD package v4.6.0.0. The workaround proposed by Tim works but needs to be done manually on every code change/addition. For now we manually downgrade the FBD/LD package from v4.6.0.0 down to v4.5.0.0 after installation of CoDeSys. Same as you did. I hope this gets fixed on a next patch.
Did you test this with the latest version of the CODESYS Visualization add-on? Something that you might want to test is if it works better when you disable the "Support client animation and overlay of native elements". Double-click on the VisualizationManager in your project to find this setting.