I'm Having the same issue. If I highlight PLC Logic and import it erases everything else and replaces the Task config. If I highlight the Application I get the same result. Simple manual fix is click and drag the task config onto the origional Application, and delete the second one. Easy fix but not the expected result of importing task config.
Any reason BIT and BOOL data types are not interchangeable? Trying to make a function which takes a BOOL IN/OUT parameter (Not allowed to use BIT) In the main logic if I make a DINT variable, and want to use each bit on different functions CODESYS will not allow it.